Overview
Species: Solanum lycopersicum
Genus: Solanum
Family: Solanaceae
Taxonomy ID: 4081
Common Name: tomato
Introduction
      Solanum lycopersicum is an annual herbaceous plant of the Solanaceae family. Native to Central and South America, it is now widely cultivated around the world and plays an important role in the global diet. In addition, tomato is widely used as a model organism in plant biology and genetics research, including studying plant growth and development, genetic traits, and the molecular mechanisms of above-ground root. With the rapid development of single-cell sequencing technology, the map of tomato shoot-borne root development at single-cell resolution was released in 2022[1], and a spatial transcriptome map of tomato callus shoot regeneration was established for the first time in 2023[2].
[1] Omary M, Gil-Yarom N, Yahav C, et al. A conserved superlocus regulates above-and belowground root initiation[J]. Science, 2022, 375(6584): eabf4368.
[2] Song X, Guo P, Xia K, et al. Spatial transcriptomics reveals light-induced chlorenchyma cells involved in promoting shoot regeneration in tomato callus[J]. Proceedings of the National Academy of Sciences, 2023, 120(38): e2310163120.
Genomic Infomation
Reference Genome: ITAG4.0 (from: ITAG)
Genome Size: 782.5 Mb
Scaffold N50: 65 Mb
Gene Number: 3405
lncRNA Number: 7826 (from: PLncDB,ITAG)
Tissue
Project